IL_4V8T_059
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 4V8T|1|5|A|1221
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_059 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.1825
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V8T|1|5|U|1218
4V8T|1|5|C|1219
4V8T|1|5|U|1220
4V8T|1|5|A|1221
4V8T|1|5|G|1222
4V8T|1|5|A|1223
4V8T|1|5|C|1224
4V8T|1|5|A|1225
4V8T|1|5|G|1226
*
4V8T|1|5|C|1283
4V8T|1|5|C|1284
4V8T|1|5|G|1285
4V8T|1|5|A|1286
4V8T|1|5|A|1287
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain S
- 60S RIBOSOMAL PROTEIN L20-A
- Chain q
- 60S ACIDIC RIBOSOMAL PROTEIN P0
Coloring options: