IL_4V8T_066
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_066 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.0509
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
4V8T|1|5|G|1444
4V8T|1|5|U|1445
4V8T|1|5|A|1446
4V8T|1|5|G|1447
4V8T|1|5|U|1448
4V8T|1|5|A|1449
4V8T|1|5|G|1450
*
4V8T|1|5|C|2354
4V8T|1|5|G|2355
4V8T|1|5|A|2356
4V8T|1|5|A|2357
4V8T|1|5|A|2358
4V8T|1|5|C|2359
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S RIBOSOMAL PROTEIN L4-A
- Chain P
- 60S RIBOSOMAL PROTEIN L17-A
Coloring options: