IL_4V8T_068
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GUCAAC*GGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_068 not in the Motif Atlas
- Homologous match to IL_5TBW_062
- Geometric discrepancy: 0.0652
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4V8T|1|5|G|1500
4V8T|1|5|U|1501
4V8T|1|5|C|1502
4V8T|1|5|A|1503
4V8T|1|5|A|1504
4V8T|1|5|C|1505
*
4V8T|1|5|G|1513
4V8T|1|5|G|1514
4V8T|1|5|A|1515
4V8T|1|5|C|1516
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain P
- 60S RIBOSOMAL PROTEIN L17-A
- Chain R
- 60S RIBOSOMAL PROTEIN L19-B
- Chain l
- 60S RIBOSOMAL PROTEIN L39
- Chain t
- PROBABLE METALLOPROTEASE ARX1
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