IL_4V8T_082
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- AAUAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_082 not in the Motif Atlas
- Homologous match to IL_5TBW_074
- Geometric discrepancy: 0.0479
- The information below is about IL_5TBW_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4V8T|1|5|A|1883
4V8T|1|5|A|1884
4V8T|1|5|U|1885
4V8T|1|5|A|1886
4V8T|1|5|A|1887
4V8T|1|5|U|1888
4V8T|1|5|G|1889
*
4V8T|1|5|C|2346
4V8T|1|5|U|2347
4V8T|1|5|A|2348
4V8T|1|5|U|2349
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B
- 60S RIBOSOMAL PROTEIN L3
- Chain P
- 60S RIBOSOMAL PROTEIN L17-A
- Chain d
- 60S RIBOSOMAL PROTEIN L31-A
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