IL_4V8Z_009

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

4V8Z|1|B2|C|114, 4V8Z|1|B2|G|115

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_009 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.0744

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V8Z|1|B2|U|113
4V8Z|1|B2|C|114
4V8Z|1|B2|G|115
4V8Z|1|B2|U|116
*
4V8Z|1|B2|A|300
4V8Z|1|B2|A|301

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AI

40S RIBOSOMAL PROTEIN S8-A

Chain AL

40S RIBOSOMAL PROTEIN S11-A