IL_4V8Z_020

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

4V8Z|1|B2|U|313, 4V8Z|1|B2|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_020 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0444

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

4V8Z|1|B2|U|311
4V8Z|1|B2|A|312
4V8Z|1|B2|U|313
4V8Z|1|B2|C|314
4V8Z|1|B2|A|315
4V8Z|1|B2|A|316
*
4V8Z|1|B2|U|348
4V8Z|1|B2|U|349
4V8Z|1|B2|U|350
4V8Z|1|B2|C|351
4V8Z|1|B2|A|352
4V8Z|1|B2|A|353
4V8Z|1|B2|C|354
4V8Z|1|B2|G|355

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AI

40S RIBOSOMAL PROTEIN S8-A

Chain AL

40S RIBOSOMAL PROTEIN S11-A

Chain AX

40S RIBOSOMAL PROTEIN S23-A