IL_4V8Z_026
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CCAAUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 4V8Z|1|B2|G|459
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_026 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.0668
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4V8Z|1|B2|C|443
4V8Z|1|B2|C|444
4V8Z|1|B2|A|445
4V8Z|1|B2|A|446
4V8Z|1|B2|U|447
4V8Z|1|B2|C|448
*
4V8Z|1|B2|G|458
4V8Z|1|B2|G|459
4V8Z|1|B2|A|460
4V8Z|1|B2|G|461
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AE
- 40S RIBOSOMAL PROTEIN S4-A
- Chain AJ
- 40S RIBOSOMAL PROTEIN S9-A
- Chain AY
- 40S RIBOSOMAL PROTEIN S24-A
- Chain CV
- EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2
Coloring options: