IL_4V8Z_046

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_046 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.0864

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V8Z|1|B2|G|871
4V8Z|1|B2|G|872
4V8Z|1|B2|U|873
4V8Z|1|B2|C|874
*
4V8Z|1|B2|G|953
4V8Z|1|B2|G|954
4V8Z|1|B2|A|955
4V8Z|1|B2|C|956

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A1

40S RIBOSOMAL PROTEIN S27-A

Chain AB

40S RIBOSOMAL PROTEIN S1-A

Chain AN

40S RIBOSOMAL PROTEIN S13