IL_4V8Z_051
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_051 not in the Motif Atlas
- Geometric match to IL_4V88_436
- Geometric discrepancy: 0.1509
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4V8Z|1|B2|C|990
4V8Z|1|B2|G|991
4V8Z|1|B2|A|992
4V8Z|1|B2|A|993
4V8Z|1|B2|G|994
*
4V8Z|1|B2|C|1010
4V8Z|1|B2|G|1011
4V8Z|1|B2|U|1012
4V8Z|1|B2|A|1013
4V8Z|1|B2|G|1014
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A0
- 40S RIBOSOMAL PROTEIN S26-A
- Chain AO
- 40S RIBOSOMAL PROTEIN S14-A
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BA
- 60S RIBOSOMAL PROTEIN L2-B
Coloring options: