IL_4V8Z_081
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_081 not in the Motif Atlas
- Homologous match to IL_4V88_466
- Geometric discrepancy: 0.1037
- The information below is about IL_4V88_466
- Detailed Annotation
- Non canonical cWW and near pair
- Broad Annotation
- Non canonical cWW and near pair
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8Z|1|B2|C|1644
4V8Z|1|B2|G|1645
4V8Z|1|B2|C|1646
4V8Z|1|B2|U|1647
*
4V8Z|1|B2|A|1753
4V8Z|1|B2|A|1754
4V8Z|1|B2|A|1755
4V8Z|1|B2|A|1756||A
4V8Z|1|B2|G|1757
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A4
- 40S RIBOSOMAL PROTEIN S30-A
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CX
- 5'-R(*AP*UP*GP)-3'
Coloring options: