IL_4V8Z_091

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UUAG*CAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_091 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.353

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V8Z|1|B2|U|1687
4V8Z|1|B2|U|1688
4V8Z|1|B2|A|1689
4V8Z|1|B2|G|1690
*
4V8Z|1|B2|C|1711
4V8Z|1|B2|A|1712
4V8Z|1|B2|G|1713
4V8Z|1|B2|A|1714

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain BW

60S RIBOSOMAL PROTEIN L24-A