IL_4V8Z_112

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

4V8Z|1|B5|U|534, 4V8Z|1|B5|U|558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_112 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.0685

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V8Z|1|B5|G|531
4V8Z|1|B5|A|532
4V8Z|1|B5|A|533
4V8Z|1|B5|U|534
4V8Z|1|B5|G|535
4V8Z|1|B5|U|536
4V8Z|1|B5|A|537
4V8Z|1|B5|G|538
*
4V8Z|1|B5|U|553
4V8Z|1|B5|A|554
4V8Z|1|B5|U|555
4V8Z|1|B5|U|556
4V8Z|1|B5|A|557
4V8Z|1|B5|U|558
4V8Z|1|B5|A|559
4V8Z|1|B5|G|560
4V8Z|1|B5|C|561

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BM

60S RIBOSOMAL PROTEIN L14-B

Chain BS

60S RIBOSOMAL PROTEIN L20-B