IL_4V8Z_120
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V8Z|1|B5|A|933, 4V8Z|1|B5|G|937
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_120 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.044
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8Z|1|B5|G|805
4V8Z|1|B5|A|806
4V8Z|1|B5|A|807
4V8Z|1|B5|A|808
4V8Z|1|B5|G|809
*
4V8Z|1|B5|C|931
4V8Z|1|B5|U|932
4V8Z|1|B5|A|933
4V8Z|1|B5|G|934
4V8Z|1|B5|U|935
4V8Z|1|B5|A|936
4V8Z|1|B5|G|937
4V8Z|1|B5|C|938
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
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