IL_4V8Z_126
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 4V8Z|1|B5|G|908, 4V8Z|1|B5|A|920, 4V8Z|1|B5|A|921
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_126 not in the Motif Atlas
- Homologous match to IL_5TBW_033
- Geometric discrepancy: 0.0629
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V8Z|1|B5|G|907
4V8Z|1|B5|G|908
4V8Z|1|B5|G|909
*
4V8Z|1|B5|U|919
4V8Z|1|B5|A|920
4V8Z|1|B5|A|921
4V8Z|1|B5|U|922
4V8Z|1|B5|C|923
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BA
- 60S RIBOSOMAL PROTEIN L2-B
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain BP
- 60S RIBOSOMAL PROTEIN L17-A
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
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