IL_4V8Z_147
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 4V8Z|1|B5|U|1191, 4V8Z|1|B5|C|1192, 4V8Z|1|B5|C|1316, 4V8Z|1|B5|A|1318
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_147 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.0638
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B5|C|1187
4V8Z|1|B5|U|1188
4V8Z|1|B5|C|1189
4V8Z|1|B5|A|1190
4V8Z|1|B5|U|1191
4V8Z|1|B5|C|1192
4V8Z|1|B5|A|1193
4V8Z|1|B5|G|1194
*
4V8Z|1|B5|C|1314
4V8Z|1|B5|U|1315
4V8Z|1|B5|C|1316
4V8Z|1|B5|A|1317
4V8Z|1|B5|A|1318
4V8Z|1|B5|G|1319
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BH
- 60S RIBOSOMAL PROTEIN L9-A
- Chain BM
- 60S RIBOSOMAL PROTEIN L14-B
- Chain BO
- 60S RIBOSOMAL PROTEIN L16-A
- Chain BS
- 60S RIBOSOMAL PROTEIN L20-B
- Chain Bm
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
Coloring options: