IL_4V8Z_155

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_155 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0509

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V8Z|1|B5|G|1444
4V8Z|1|B5|U|1445
4V8Z|1|B5|A|1446
4V8Z|1|B5|G|1447
4V8Z|1|B5|U|1448
4V8Z|1|B5|A|1449
4V8Z|1|B5|G|1450
*
4V8Z|1|B5|C|2354
4V8Z|1|B5|G|2355
4V8Z|1|B5|A|2356
4V8Z|1|B5|A|2357
4V8Z|1|B5|A|2358
4V8Z|1|B5|C|2359

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S RIBOSOMAL PROTEIN L4-A

Chain BP

60S RIBOSOMAL PROTEIN L17-A