IL_4V8Z_157

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_157 not in the Motif Atlas

Homologous match to IL_5TBW_062

Geometric discrepancy: 0.0652

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V8Z|1|B5|G|1500
4V8Z|1|B5|U|1501
4V8Z|1|B5|C|1502
4V8Z|1|B5|A|1503
4V8Z|1|B5|A|1504
4V8Z|1|B5|C|1505
*
4V8Z|1|B5|G|1513
4V8Z|1|B5|G|1514
4V8Z|1|B5|A|1515
4V8Z|1|B5|C|1516

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BP

60S RIBOSOMAL PROTEIN L17-A

Chain BR

60S RIBOSOMAL PROTEIN L19-B

Chain Bl

60S RIBOSOMAL PROTEIN L39