IL_4V8Z_161

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

4V8Z|1|B5|U|1820, 4V8Z|1|B5|U|1821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_161 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.248

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V8Z|1|B5|G|1623
4V8Z|1|B5|G|1624
4V8Z|1|B5|A|1625
*
4V8Z|1|B5|U|1818
4V8Z|1|B5|U|1819
4V8Z|1|B5|U|1820
4V8Z|1|B5|U|1821
4V8Z|1|B5|C|1822

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain Bg

60S RIBOSOMAL PROTEIN L34-A