IL_4V8Z_170
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 4V8Z|1|B5|U|1716, 4V8Z|1|B5|A|1729
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_170 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.0588
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8Z|1|B5|C|1711
4V8Z|1|B5|G|1712
4V8Z|1|B5|G|1713
4V8Z|1|B5|A|1714
4V8Z|1|B5|A|1715
4V8Z|1|B5|U|1716
4V8Z|1|B5|U|1717
*
4V8Z|1|B5|G|1727
4V8Z|1|B5|G|1728
4V8Z|1|B5|A|1729
4V8Z|1|B5|G|1730
4V8Z|1|B5|A|1731
4V8Z|1|B5|U|1732
4V8Z|1|B5|G|1733
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain AN
- 40S RIBOSOMAL PROTEIN S13
- Chain BR
- 60S RIBOSOMAL PROTEIN L19-B
- Chain BZ
- 60S RIBOSOMAL PROTEIN L27-A
- Chain Bc
- 60S RIBOSOMAL PROTEIN L30
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34-A
Coloring options: