IL_4V8Z_195
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_195 not in the Motif Atlas
- Homologous match to IL_5TBW_100
- Geometric discrepancy: 0.0676
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4V8Z|1|B5|U|2718
4V8Z|1|B5|U|2719
4V8Z|1|B5|G|2720
4V8Z|1|B5|A|2721
*
4V8Z|1|B5|U|2735
4V8Z|1|B5|A|2736
4V8Z|1|B5|C|2737
4V8Z|1|B5|A|2738
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18-A
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
- Chain Bb
- 60S RIBOSOMAL PROTEIN L29
- Chain Bo
- 60S RIBOSOMAL PROTEIN L42-A
Coloring options: