IL_4V8Z_211
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_211 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.0504
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V8Z|1|B5|C|3018
4V8Z|1|B5|U|3019
4V8Z|1|B5|U|3020
4V8Z|1|B5|A|3021
4V8Z|1|B5|G|3022
4V8Z|1|B5|U|3023
4V8Z|1|B5|A|3024
4V8Z|1|B5|C|3025
*
4V8Z|1|B5|G|3030
4V8Z|1|B5|G|3031
4V8Z|1|B5|A|3032
4V8Z|1|B5|A|3033
4V8Z|1|B5|C|3034
4V8Z|1|B5|A|3035
4V8Z|1|B5|G|3036
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BB
- 60S RIBOSOMAL PROTEIN L3
- Chain BH
- 60S RIBOSOMAL PROTEIN L9-A
- Chain BV
- 60S RIBOSOMAL PROTEIN L23-A
- Chain Bm
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
- Chain CV
- EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2
Coloring options: