IL_4V9A_332

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGG*CUGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_332 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.5428

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V9A|1|DA|C|2097
4V9A|1|DA|U|2098
4V9A|1|DA|U|2099
4V9A|1|DA|G|2100
4V9A|1|DA|G|2101
*
4V9A|1|DA|C|2188
4V9A|1|DA|U|2189
4V9A|1|DA|G|2190
4V9A|1|DA|G|2191
4V9A|1|DA|G|2192

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DK

50S ribosomal protein L9