IL_4V9C_062

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACGG*CCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACGG,CCGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_062 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2612

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V9C|1|AA|A|1000
4V9C|1|AA|C|1001
4V9C|1|AA|G|1002
4V9C|1|AA|G|1003
*
4V9C|1|AA|C|1037
4V9C|1|AA|C|1038
4V9C|1|AA|G|1039
4V9C|1|AA|U|1040

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14