IL_4V9C_394

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V9C|1|DA|A|1938, 4V9C|1|DA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_394 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.14

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4V9C|1|DA|C|1934
4V9C|1|DA|G|1935
4V9C|1|DA|A|1936
4V9C|1|DA|A|1937
4V9C|1|DA|A|1938
4V9C|1|DA|U|1939
4V9C|1|DA|U|1940
4V9C|1|DA|C|1941
4V9C|1|DA|C|1942
4V9C|1|DA|U|1943
4V9C|1|DA|U|1944
4V9C|1|DA|G|1945
*
4V9C|1|DA|C|1961
4V9C|1|DA|C|1962
4V9C|1|DA|U|1963
4V9C|1|DA|G|1964

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CY

Ribosome recycling factor, RRF

Chain DC

50S ribosomal protein L2