IL_4V9C_487

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCCAG*CGGA

Length

9 nucleotides

Bulged bases

4V9C|1|DA|C|1489, 4V9C|1|DA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_487 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3901

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V9C|1|DA|U|1487
4V9C|1|DA|C|1488
4V9C|1|DA|C|1489
4V9C|1|DA|A|1490
4V9C|1|DA|G|1491
*
4V9C|1|DA|C|1499
4V9C|1|DA|G|1500
4V9C|1|DA|G|1501
4V9C|1|DA|A|1502

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L2