IL_4V9I_012

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V9I|1|AA|U|244, 4V9I|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_012 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0808

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V9I|1|AA|C|242
4V9I|1|AA|A|243
4V9I|1|AA|U|244
4V9I|1|AA|C|245
4V9I|1|AA|A|246
4V9I|1|AA|G|247
*
4V9I|1|AA|C|277
4V9I|1|AA|G|278
4V9I|1|AA|A|279
4V9I|1|AA|C|280
4V9I|1|AA|G|281
4V9I|1|AA|A|282
4V9I|1|AA|C|283
4V9I|1|AA|G|284

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S Ribosomal protein S12

Chain AQ

30S Ribosomal protein S17