IL_4V9I_191
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 4V9I|1|CA|U|240, 4V9I|1|CA|C|276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_191 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0748
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V9I|1|CA|C|238
4V9I|1|CA|A|239
4V9I|1|CA|U|240
4V9I|1|CA|C|241
4V9I|1|CA|A|242
4V9I|1|CA|G|243
*
4V9I|1|CA|C|273
4V9I|1|CA|G|274
4V9I|1|CA|A|275
4V9I|1|CA|C|276
4V9I|1|CA|G|277
4V9I|1|CA|A|278
4V9I|1|CA|C|279
4V9I|1|CA|G|280
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CL
- 30S Ribosomal protein S12
- Chain CQ
- 30S Ribosomal protein S17
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