IL_4V9I_201
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V9I|1|CA|A|516, 4V9I|1|CA|U|518, 4V9I|1|CA|A|519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_201 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1643
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V9I|1|CA|G|499
4V9I|1|CA|U|500
4V9I|1|CA|G|501
4V9I|1|CA|C|502
4V9I|1|CA|C|503
4V9I|1|CA|A|504
4V9I|1|CA|G|505
*
4V9I|1|CA|C|512
4V9I|1|CA|G|513
4V9I|1|CA|G|514
4V9I|1|CA|U|515
4V9I|1|CA|A|516
4V9I|1|CA|A|517
4V9I|1|CA|U|518
4V9I|1|CA|A|519
4V9I|1|CA|C|520
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CC
- 30S Ribosomal protein S3
- Chain CD
- 30S Ribosomal protein S4
- Chain CL
- 30S Ribosomal protein S12
- Chain CY
- A-SITE tRNA
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