IL_4V9I_214

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_214 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0679

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V9I|1|CA|G|865
4V9I|1|CA|G|866
4V9I|1|CA|A|867
4V9I|1|CA|G|868
4V9I|1|CA|U|869
4V9I|1|CA|A|870
4V9I|1|CA|C|871
4V9I|1|CA|G|872
*
4V9I|1|CA|U|883
4V9I|1|CA|G|884
4V9I|1|CA|A|885
4V9I|1|CA|A|886
4V9I|1|CA|A|887
4V9I|1|CA|C|888

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S Ribosomal protein S12

Chain CQ

30S Ribosomal protein S17