IL_4V9I_232

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_232 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0886

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V9I|1|CA|C|1285
4V9I|1|CA|G|1286
4V9I|1|CA|G|1287
4V9I|1|CA|A|1288
4V9I|1|CA|U|1289
4V9I|1|CA|U|1290
*
4V9I|1|CA|A|1311
4V9I|1|CA|U|1312
4V9I|1|CA|G|1313
4V9I|1|CA|A|1314
4V9I|1|CA|A|1315
4V9I|1|CA|G|1316

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CM

30S Ribosomal protein S13

Chain CU

30S Ribosomal protein THX