IL_4V9I_279

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V9I|1|DA|C|1040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_279 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.0953

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V9I|1|DA|C|1039
4V9I|1|DA|C|1040
4V9I|1|DA|A|1041
*
4V9I|1|DA|U|1204
4V9I|1|DA|G|1205

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L30

Chain DN

50S ribosomal protein L13

Chain DU

50S ribosomal protein L20

Chain DV

50S ribosomal protein L21