3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
4W29|1|AA|U|244, 4W29|1|AA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W29_013 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.1861
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

4W29|1|AA|C|242
4W29|1|AA|A|243
4W29|1|AA|U|244
4W29|1|AA|C|245
4W29|1|AA|A|246
4W29|1|AA|G|247
*
4W29|1|AA|C|277
4W29|1|AA|G|278
4W29|1|AA|A|279
4W29|1|AA|C|280
4W29|1|AA|G|281
4W29|1|AA|A|282
4W29|1|AA|C|283
4W29|1|AA|G|284

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AL
30S ribosomal protein S12
Chain AQ
30S ribosomal protein S17

Coloring options:


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