IL_4W29_108

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4W29|1|BA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_108 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.2058

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_37047.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4W29|1|BA|G|1031
4W29|1|BA|A|1032
4W29|1|BA|U|1033
4W29|1|BA|G|1034
*
4W29|1|BA|C|1121
4W29|1|BA|G|1122
4W29|1|BA|C|1123

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BQ

50S ribosomal protein L16