IL_4W29_118

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

4W29|1|BA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_118 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3428

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4W29|1|BA|G|1319
4W29|1|BA|C|1320
4W29|1|BA|A|1321
4W29|1|BA|A|1322
4W29|1|BA|U|1323
4W29|1|BA|G|1324
*
4W29|1|BA|C|1330
4W29|1|BA|A|1331
4W29|1|BA|G|1332
4W29|1|BA|C|1333

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L22

Chain BX

50S ribosomal protein L23