3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4W29|1|CA|A|532, 4W29|1|CA|U|534, 4W29|1|CA|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W29_212 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.2717
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4W29|1|CA|G|515
4W29|1|CA|U|516
4W29|1|CA|G|517
4W29|1|CA|C|518
4W29|1|CA|C|519
4W29|1|CA|A|520
4W29|1|CA|G|521
*
4W29|1|CA|C|528
4W29|1|CA|G|529
4W29|1|CA|G|530
4W29|1|CA|U|531
4W29|1|CA|A|532
4W29|1|CA|A|533
4W29|1|CA|U|534
4W29|1|CA|A|535
4W29|1|CA|C|536

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CC
30S ribosomal protein S3
Chain CL
30S ribosomal protein S12
Chain CV
mRNA
Chain CY
Elongation factor G

Coloring options:


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