IL_4W29_235
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGCAU*AUGG
- Length
- 10 nucleotides
- Bulged bases
- 4W29|1|CA|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W29_235 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3268
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4W29|1|CA|C|1051
4W29|1|CA|U|1052
4W29|1|CA|G|1053
4W29|1|CA|C|1054
4W29|1|CA|A|1055
4W29|1|CA|U|1056
*
4W29|1|CA|A|1204
4W29|1|CA|U|1205
4W29|1|CA|G|1206
4W29|1|CA|G|1207
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CC
- 30S ribosomal protein S3
- Chain CJ
- 30S ribosomal protein S10
- Chain CN
- 30S ribosomal protein S14 type Z
- Chain CV
- mRNA
- Chain CX
- Transfer RNA; tRNA
- Chain CY
- Elongation factor G
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