IL_4W29_392
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W29_392 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.2104
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4W29|1|DB|C|71
4W29|1|DB|G|72
4W29|1|DB|A|73
4W29|1|DB|U|74
4W29|1|DB|G|75
4W29|1|DB|G|76
4W29|1|DB|U|77
4W29|1|DB|A|78
4W29|1|DB|C|79
*
4W29|1|DB|G|97
4W29|1|DB|G|98
4W29|1|DB|A|99
4W29|1|DB|G|100
4W29|1|DB|A|101
4W29|1|DB|G|102
4W29|1|DB|U|103
4W29|1|DB|A|104
4W29|1|DB|G|105
Current chains
- Chain DB
- 5S Ribosomal RNA
Nearby chains
- Chain D3
- 50S ribosomal protein L30
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S ribosomal protein L16
- Chain DZ
- 50S ribosomal protein L25
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