IL_4W29_398

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUC*GUCUG

Length

9 nucleotides

Bulged bases

4W29|1|AA|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_398 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2608

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4W29|1|AA|C|1060
4W29|1|AA|G|1061
4W29|1|AA|U|1062
4W29|1|AA|C|1063
*
4W29|1|AA|G|1193
4W29|1|AA|U|1194
4W29|1|AA|C|1195
4W29|1|AA|U|1196
4W29|1|AA|G|1197

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AE

30S ribosomal protein S5

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z

Chain AV

mRNA

Chain AX

Transfer RNA; tRNA