3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W29_416 not in the Motif Atlas
Homologous match to IL_5J7L_034
Geometric discrepancy: 0.1817
The information below is about IL_5J7L_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

4W29|1|CA|G|673
4W29|1|CA|G|674
4W29|1|CA|A|675
4W29|1|CA|A|676
4W29|1|CA|U|677
4W29|1|CA|U|678
*
4W29|1|CA|A|712
4W29|1|CA|G|713
4W29|1|CA|G|714
4W29|1|CA|A|715
4W29|1|CA|A|716
4W29|1|CA|C|717

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CF
30S ribosomal protein S6
Chain CK
30S ribosomal protein S11
Chain CR
30S ribosomal protein S18
Chain DD
50S ribosomal protein L2

Coloring options:


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