IL_4WR6_212

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4WR6|1|1G|A|532||||P_1, 4WR6|1|1G|U|534||||P_1, 4WR6|1|1G|A|535||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WR6_212 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.159

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WR6|1|1G|G|515||||P_1
4WR6|1|1G|U|516||||P_1
4WR6|1|1G|G|517||||P_1
4WR6|1|1G|C|518||||P_1
4WR6|1|1G|C|519||||P_1
4WR6|1|1G|A|520||||P_1
4WR6|1|1G|G|521||||P_1
*
4WR6|1|1G|C|528||||P_1
4WR6|1|1G|G|529||||P_1
4WR6|1|1G|G|530||||P_1
4WR6|1|1G|U|531||||P_1
4WR6|1|1G|A|532||||P_1
4WR6|1|1G|A|533||||P_1
4WR6|1|1G|U|534||||P_1
4WR6|1|1G|A|535||||P_1
4WR6|1|1G|C|536||||P_1

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 22

30S ribosomal protein S3

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12

Chain 4L

mRNA