IL_4WT8_289

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

4WT8|1|D1|G|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_289 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3793

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4WT8|1|D1|G|1364
4WT8|1|D1|C|1365
4WT8|1|D1|A|1366
4WT8|1|D1|A|1367
4WT8|1|D1|U|1368
4WT8|1|D1|G|1369
*
4WT8|1|D1|C|1375
4WT8|1|D1|A|1376
4WT8|1|D1|G|1377
4WT8|1|D1|C|1378

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DW

50S ribosomal protein L22

Chain DX

50S ribosomal protein L23