IL_4WWW_029

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4WWW|1|QA|A|532, 4WWW|1|QA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_029 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1402

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WWW|1|QA|G|515
4WWW|1|QA|U|516
4WWW|1|QA|G|517
4WWW|1|QA|C|518
4WWW|1|QA|C|519
4WWW|1|QA|A|520
4WWW|1|QA|G|521
*
4WWW|1|QA|C|528
4WWW|1|QA|G|529
4WWW|1|QA|G|530
4WWW|1|QA|U|531
4WWW|1|QA|A|532
4WWW|1|QA|A|533
4WWW|1|QA|U|534
4WWW|1|QA|A|535
4WWW|1|QA|C|536

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12