IL_4WWW_106

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4WWW|1|RA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_106 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1249

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4WWW|1|RA|U|1018
4WWW|1|RA|U|1019
4WWW|1|RA|A|1020
4WWW|1|RA|A|1021
4WWW|1|RA|G|1022
4WWW|1|RA|U|1023
4WWW|1|RA|G|1024
*
4WWW|1|RA|C|1140
4WWW|1|RA|U|1141
4WWW|1|RA|A|1142
4WWW|1|RA|A|1143
4WWW|1|RA|A|1144

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R4

50S ribosomal protein L36

Chain RJ

50S ribosomal protein L13