IL_4WWW_108

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4WWW|1|RA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_108 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0887

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4WWW|1|RA|G|1031
4WWW|1|RA|A|1032
4WWW|1|RA|U|1033
4WWW|1|RA|G|1034
*
4WWW|1|RA|C|1121
4WWW|1|RA|G|1122
4WWW|1|RA|C|1123

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R4

50S ribosomal protein L36

Chain RB

5S ribosomal RNA; 5S rRNA

Chain RM

50S ribosomal protein L16