IL_4WWW_141

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4WWW|1|RA|A|1801, 4WWW|1|RA|C|1816, 4WWW|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_141 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0474

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4WWW|1|RA|U|1798
4WWW|1|RA|G|1799
4WWW|1|RA|C|1800
4WWW|1|RA|A|1801
4WWW|1|RA|A|1802
4WWW|1|RA|A|1803
4WWW|1|RA|C|1804
*
4WWW|1|RA|G|1813
4WWW|1|RA|G|1814
4WWW|1|RA|A|1815
4WWW|1|RA|C|1816
4WWW|1|RA|G|1817
4WWW|1|RA|U|1818
4WWW|1|RA|A|1819
4WWW|1|RA|U|1820
4WWW|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RC

50S ribosomal protein L2