IL_4WWW_154

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_154 not in the Motif Atlas

Geometric match to IL_4WZM_001

Geometric discrepancy: 0.2004

The information below is about IL_4WZM_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4WWW|1|RA|C|2103
4WWW|1|RA|C|2104
4WWW|1|RA|U|2105
*
4WWW|1|RA|A|2184
4WWW|1|RA|U|2185
4WWW|1|RA|G|2186

Current chains

Chain RA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA