IL_4WWW_172

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4WWW|1|RA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_172 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0599

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WWW|1|RA|C|2636
4WWW|1|RA|U|2637
4WWW|1|RA|G|2638
4WWW|1|RA|A|2639
4WWW|1|RA|G|2640
*
4WWW|1|RA|C|2774
4WWW|1|RA|G|2775
4WWW|1|RA|A|2776
4WWW|1|RA|G|2777
4WWW|1|RA|A|2778
4WWW|1|RA|U|2779
4WWW|1|RA|G|2780
4WWW|1|RA|A|2781
4WWW|1|RA|G|2782

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L3

Chain RJ

50S ribosomal protein L13