IL_4WWW_247

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

4WWW|1|XA|A|1257, 4WWW|1|XA|A|1280, 4WWW|1|XA|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_247 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.4712

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4WWW|1|XA|G|1255
4WWW|1|XA|A|1256
4WWW|1|XA|A|1257
4WWW|1|XA|G|1258
*
4WWW|1|XA|C|1277
4WWW|1|XA|G|1278
4WWW|1|XA|G|1279
4WWW|1|XA|A|1280
4WWW|1|XA|C|1281
4WWW|1|XA|C|1282

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14