IL_4XEJ_012
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 4XEJ|1|A16S|U|244, 4XEJ|1|A16S|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4XEJ_012 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0766
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4XEJ|1|A16S|C|242
4XEJ|1|A16S|A|243
4XEJ|1|A16S|U|244
4XEJ|1|A16S|C|245
4XEJ|1|A16S|A|246
4XEJ|1|A16S|G|247
*
4XEJ|1|A16S|C|277
4XEJ|1|A16S|G|278
4XEJ|1|A16S|A|279
4XEJ|1|A16S|C|280
4XEJ|1|A16S|G|281
4XEJ|1|A16S|A|282
4XEJ|1|A16S|C|283
4XEJ|1|A16S|G|284
Current chains
- Chain A16S
- 16S ribosomal RNA
Nearby chains
- Chain AS12
- 30S ribosomal protein S12
- Chain AS17
- 30S ribosomal protein S17
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