IL_4XEJ_023
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4XEJ_023 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.1034
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
4XEJ|1|A16S|U|580
4XEJ|1|A16S|G|581
4XEJ|1|A16S|U|582
4XEJ|1|A16S|A|583
4XEJ|1|A16S|G|584
*
4XEJ|1|A16S|U|757
4XEJ|1|A16S|G|758
4XEJ|1|A16S|A|759
4XEJ|1|A16S|G|760
4XEJ|1|A16S|G|761
Current chains
- Chain A16S
- 16S ribosomal RNA
Nearby chains
- Chain A23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS08
- 30S ribosomal protein S8
- Chain AS12
- 30S ribosomal protein S12
- Chain AS15
- 30S ribosomal protein S15
- Chain AS17
- 30S ribosomal protein S17
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